lol, AVPFREAK, the end of ur story is sounding a little resident evil: apocalypse *shudders*, that movie was a discrace to the great game franchise.
My personal idea for AVP2 would be that it would be set after aliens. Hadley's Hope would have been destroyed by the explosion, but the derelect Space Jockey ship remained, due to it's advanced technology. The military picks up the derelect's prescense & send in a team to investigate, once there, they discover that the space jockeys were transporting the alien eggs for an unknown being, with an unknown agenda.
A large quantity of eggs arre moved to a "secure" holding facility, where they are studied, & eventually become adults, one specimen which was caught wandering the ship as an adult,intrigues the scientists particularly, it is larger & stronger than the others, & has mandible- like mouthparts external to it's jaws. This creature appears to have been procreated from a solitary individual, which was supervising the transportation of the xenomorphs, but it was not of the same species as the Jockeys.
Far off in space, a band of mighty yautja hunters suit up, ready to reclaim their cargo. The jockeys had been transporting alien eggs from planet to planet, working alongside the yautja, the beasts would breed in the planet's inhabitants, & were then hunted by the extraterrestrial skull-collectors.
Research, Week 6- The xenomorphs have been restless lately, even more aggressive than usual, as if they sense something, something coming.....